Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02785Hypothetical protein; KEGG: stz:SPYALAB49_000865 1.1e-42 phosphoenolpyruvate carboxylase; Psort location: Cytoplasmic, score: 7.50. (337 aa)    
Predicted Functional Partners:
D920_00989
PTS system trehalose-specific IIBC component; KEGG: efu:HMPREF0351_10138 8.5e-290 PTS system trehalose transporter subunit IIABC; K02817 PTS system, trehalose-specific IIA component; K02818 PTS system, trehalose-specific IIB component K02819; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.983
D920_02780
KEGG: smp:SMAC_05546 0.0080 hypothetical protein; K03564 peroxiredoxin Q/BCP; Psort location: Cytoplasmic, score: 7.50.
       0.982
D920_02783
Hypothetical protein.
       0.980
D920_02691
KEGG: efc:EFAU004_01302 2.7e-25 4-oxalocrotonate tautomerase K01821.
  
    0.975
tdk
Thymidine kinase; KEGG: efc:EFAU004_02304 1.4e-92 tdk; thymidine kinase K00857; Psort location: Cytoplasmic, score: 9.95.
       0.967
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.967
prmC
protein-(glutamine-N5) methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.967
D920_01201
Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.967
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
       0.967
D920_02143
Efflux ABC transporter, permease protein; KEGG: ljf:FI9785_1686 1.1e-49 ABC transporter permease K02004; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.941
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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