Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
D920_02805C4-dicarboxylate anaerobic carrier; Psort location: CytoplasmicMembrane, score: 10.00. (506 aa)    
Predicted Functional Partners:
D920_02806
Putative dipeptidase; KEGG: efu:HMPREF0351_11101 4.5e-213 pepV2; M20A subfamily peptidase; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.995
D920_02663
Cyclic nucleotide-binding domain protein; KEGG: fma:FMG_1494 3.8e-10 pyruvate-formate-lyase-activating enzyme; K04069 pyruvate formate lyase activating enzyme; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.991
tdk
Thymidine kinase; KEGG: efc:EFAU004_02304 1.4e-92 tdk; thymidine kinase K00857; Psort location: Cytoplasmic, score: 9.95.
       0.980
D920_02660
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
  
 0.980
D920_02659
Carbamate kinase; KEGG: ehr:EHR_10230 1.5e-150 putative amino acid kinase; Psort location: Cytoplasmic, score: 7.50; Belongs to the carbamate kinase family.
 
   
 0.974
arcA
Arginine deiminase; KEGG: efc:EFAU004_01736 7.9e-200 arcA; arginine deiminase K01478; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.974
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.944
D920_00830
Dipeptidase PepV; KEGG: efc:EFAU004_00274 3.1e-221 pepV; dipeptidase PepV; Psort location: Cytoplasmic, score: 7.50.
     
 0.932
argR
Arginine repressor; Regulates arginine biosynthesis genes.
  
  
 0.922
D920_02258
Peptidase, ArgE/DapE family; KEGG: efa:EF3178 7.7e-138 succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase; Psort location: Cytoplasmic, score: 7.50.
     
 0.922
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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