Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02840Hypothetical protein. (234 aa)    
Predicted Functional Partners:
D920_02838
GDSL-like protein; KEGG: efc:EFAU004_01190 5.5e-121 GDSL-like lipase/acylhydrolase; Psort location: CytoplasmicMembrane, score: 9.55.
 
  
 0.999
D920_02842
Hypothetical protein; KEGG: lru:HMPREF0538_22032 2.9e-12 serine-type D-Ala-D-Ala carboxypeptidase; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0346 family.
 
   
 0.999
D920_02837
EDD domain protein, DegV family; KEGG: mgf:MGF_3873 5.6e-16 DegV-like protein; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.996
D920_02856
Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
       0.991
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.991
D920_02858
KEGG: apb:SAR116_0616 9.3e-39 DNA protecting protein DprA K04096; Psort location: Cytoplasmic, score: 7.50.
       0.987
msrA-2
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.981
D920_02836
Channel protein, hemolysin III family; KEGG: lai:LAC30SC_04890 0.00066 tRNA CCA-pyrophosphorylase K00974; Psort location: CytoplasmicMembrane, score: 10.00.
       0.978
D920_02833
ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_11121 5.6e-277 ABC superfamily ATP binding cassette transporter, ABC protein K15738; Psort location: Cytoplasmic, score: 9.95.
 
     0.976
argR
Arginine repressor; Regulates arginine biosynthesis genes.
 
     0.972
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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