Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02883Hypothetical protein. (42 aa)    
Predicted Functional Partners:
D920_02882
Hypothetical protein.
       0.773
D920_02884
KEGG: apb:SAR116_0013 9.3e-07 BadM/Rrf2 family transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
       0.658
D920_02881
Hypothetical protein; KEGG: ssr:SALIVB_2089 3.4e-09 tyrosyl-tRNA synthetase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.542
D920_02885
Hypothetical protein; KEGG: thl:TEH_02850 2.0e-20 ntpF; putative V-type Na(+)-transporting ATPase subunit F K02121; Psort location: Cytoplasmic, score: 7.50.
       0.461
D920_02886
KEGG: thl:TEH_02860 1.1e-223 ntpI; V-type Na(+)-transporting ATPase subunit I K02123; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase 116 kDa subunit family.
       0.461
D920_02887
V-type sodium ATPase, K subunit; KEGG: thl:TEH_02870 1.1e-69 ntpK; V-type Na(+)-transporting ATPase subunit K K02124; Psort location: CytoplasmicMembrane, score: 10.00.
       0.461
D920_02888
Hypothetical protein; KEGG: thl:TEH_02880 2.0e-52 ntpE; V-type Na(+)-transporting ATPase subunit E K02121; Psort location: Cytoplasmic, score: 7.50.
       0.453
D920_02889
ATP synthase, subunit C; KEGG: thl:TEH_02890 3.8e-113 ntpC; V-type Na(+)-transporting ATPase subunit C K02119.
       0.442
D920_02890
ATP synthase, subunit F; KEGG: thl:TEH_02900 1.0e-39 ntpG; V-type Na(+)-transporting ATPase subunit G K02122.
       0.442
atpA-3
ATP synthase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
       0.437
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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