Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rnmVRibonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (190 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.999
D920_03036
KEGG: efc:EFAU004_02270 2.0e-116 TatD family hydrolase K03424; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.999
D920_03033
Hypothetical protein; KEGG: hor:Hore_14270 0.0070 heptaprenyl diphosphate synthase component I K00805; Psort location: CytoplasmicMembrane, score: 10.00.
       0.996
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
  
  
 0.995
D920_03038
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.994
D920_00178
HDIG domain protein; KEGG: efc:EFAU004_02527 2.9e-154 3'-5' exoribonuclease yhaM K03698; Psort location: Cytoplasmic, score: 7.50.
     
 0.992
D920_03024
3D domain protein; KEGG: bce:BC5196 4.4e-17 N-acetylmuramoyl-L-alanine amidase; Psort location: Extracellular, score: 9.60.
     
 0.985
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
       0.981
rpmH
Ribosomal protein L34; KEGG: mmn:midi_01062 5.6e-09 rpmH; 50S ribosomal protein L34P K02914; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL34 family.
     
 0.973
D920_01537
KEGG: lml:lmo4a_0208 1.9e-86 purR; Pur operon transcriptional repressor K09685; Psort location: Cytoplasmic, score: 9.67.
 
     0.972
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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