Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_03040Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (92 aa)    
Predicted Functional Partners:
D920_03041
KEGG: efc:EFAU004_02275 4.3e-128 NUDIX family hydrolase; Psort location: Cytoplasmic, score: 7.50.
       0.994
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
       0.976
D920_00821
tRNA binding domain protein; KEGG: efu:HMPREF0351_10247 8.0e-88 pheT; phenylalanine--tRNA ligase beta subunit K06878; Psort location: Cytoplasmic, score: 9.97; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.449
pheT
KEGG: efu:HMPREF0351_11283 0. pheT3; phenylalanine--tRNA ligase beta subunit K01890; Psort location: Cytoplasmic, score: 9.97; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.449
D920_00866
Hydrolase, NUDIX family; KEGG: cbk:CLL_A2065 1.5e-08 mutT; MutT/nudix family protein; K03574 7,8-dihydro-8-oxoguanine triphosphatase; Psort location: Cytoplasmic, score: 7.50.
       0.431
D920_02467
Hydrolase, NUDIX family; KEGG: bao:BAMF_0506 1.2e-45 yjhB; ADP-ribose pyrophosphatase.
       0.431
D920_02775
Putative calcium-translocating P-type ATPase, PMCA-type; KEGG: efu:HMPREF0351_11069 0. yoaB; P-ATPase superfamily cation transporter; Psort location: CytoplasmicMembrane, score: 10.00.
       0.417
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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