Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_03051Putative oligopeptide ABC transporter, permease protein OppC; KEGG: smq:SinmeB_4208 5.6e-44 nickel-transporting ATPase K02031:K02034; Psort location: CytoplasmicMembrane, score: 10.00. (347 aa)    
Predicted Functional Partners:
D920_01035
Putative oligopeptide ABC transporter, permease protein AppB; KEGG: bra:BRADO1094 2.0e-50 appB; oligopeptide transport system permease K02033; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
D920_01036
KEGG: efc:EFAU004_00135 1.0e-151 oppF; peptide ABC transporter ATP-binding protein K02032; Psort location: CytoplasmicMembrane, score: 9.96.
 
 0.999
D920_01037
KEGG: efc:EFAU004_00134 1.2e-166 peptide ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.96.
 
 0.999
D920_03049
KEGG: efu:HMPREF0351_12262 1.8e-147 dppF; oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein; Psort location: CytoplasmicMembrane, score: 9.96.
 
 0.999
D920_03050
KEGG: thl:TEH_21180 1.3e-144 oppD; oligopeptide ABC transporter ATP-binding protein K15583; Psort location: CytoplasmicMembrane, score: 9.99.
 
 0.999
D920_03052
Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 6.4e-63 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
D920_01033
ABC transporter, substrate-binding protein, family 5; KEGG: sti:Sthe_1622 5.4e-25 4-phytase.
  
 
 0.997
D920_03054
ABC transporter, substrate-binding protein, family 5; KEGG: esi:Exig_2517 7.5e-108 4-phytase K15580; Psort location: Cellwall, score: 9.21.
 
  
 0.997
D920_03053
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.995
D920_02127
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.981
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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