Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_03076Hypothetical protein. (258 aa)    
Predicted Functional Partners:
D920_01490
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.989
D920_02295
NAD dependent epimerase/dehydratase family protein; KEGG: efu:HMPREF0351_12357 1.5e-72 flavin reductase K07118.
       0.901
D920_03073
Ser/Thr phosphatase family protein; KEGG: efc:EFAU004_00541 3.8e-74 Calcineurin-like phosphoesterase; Psort location: CytoplasmicMembrane, score: 9.55.
       0.887
D920_02884
KEGG: apb:SAR116_0013 9.3e-07 BadM/Rrf2 family transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
       0.859
D920_02364
Flavin reductase; KEGG: ssa:SSA_0903 2.5e-20 NAD(P)H dehydrogenase (quinone); Psort location: Cytoplasmic, score: 7.50.
       0.810
D920_00197
Primase alpha helix protein; Psort location: Cytoplasmic, score: 7.50.
       0.741
D920_00299
Primase alpha helix protein; Psort location: Cytoplasmic, score: 7.50.
       0.741
D920_03075
Transporter, major facilitator family protein; KEGG: bcz:BCZK2057 9.9e-15 macrolide efflux protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.736
D920_00740
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.681
D920_02749
KEGG: sds:SDEG_0144 2.3e-10 membrane-bound protease CAAX family K07052; Psort location: CytoplasmicMembrane, score: 10.00.
       0.653
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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