Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_03097Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (208 aa)    
Predicted Functional Partners:
argR-3
Arginine repressor protein; Regulates arginine biosynthesis genes.
       0.979
D920_03095
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.948
D920_00378
Transcriptional regulator, effector binding domain protein; KEGG: pjd:Pjdr2_5363 1.6e-09 AraC family transcriptional regulator K13530; Psort location: Cytoplasmic, score: 9.97.
 
     0.925
D920_03134
HTH domain protein; KEGG: bqy:MUS_2079 1.1e-33 transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
 
     0.922
D920_00223
Transcriptional regulator, MerR family; KEGG: llo:LLO_0515 4.0e-09 GTP cyclohydrolase; K06879 7-cyano-7-deazaguanine reductase; Psort location: Cytoplasmic, score: 7.50.
       0.916
D920_00224
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.916
D920_02931
HTH domain protein; KEGG: bqy:MUS_2079 4.9e-33 transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
 
     0.916
D920_02938
KEGG: vfi:VF_A1053 2.5e-09 MerR family transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
       0.916
D920_00456
Transcriptional regulator, effector binding domain protein.
       0.911
D920_01647
Putative glycerate kinase; KEGG: efu:HMPREF0351_12655 7.4e-117 glxK; glycerate kinase K00865; Psort location: Cytoplasmic, score: 7.50; Belongs to the glycerate kinase type-1 family.
       0.880
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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