Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_03119Hypothetical protein; KEGG: abu:Abu_1908 0.0092 uppP; UDP diphosphatase K06153; Psort location: CytoplasmicMembrane, score: 10.00. (267 aa)    
Predicted Functional Partners:
D920_03091
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: efc:EFAU004_00525 2.5e-141 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.947
D920_01402
Hypothetical protein; KEGG: efu:HMPREF0351_10749 1.2e-180 ABC superfamily ATP binding cassette transporter, membrane protein K02004; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.933
D920_02317
Mg2+ transporter-C family protein; KEGG: hip:CGSHiEE_08975 1.2e-22 coaD; phosphopantetheine adenylyltransferase K07507; Psort location: CytoplasmicMembrane, score: 9.35.
 
     0.908
D920_02630
KEGG: llk:LLKF_1844 3.9e-72 malG; maltose ABC transporter permease K10110; Psort location: CytoplasmicMembrane, score: 10.00.
       0.904
D920_02075
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.900
D920_02628
ABC transporter, solute-binding protein; KEGG: snc:HMPREF0837_10106 1.1e-33 maltose/maltodextrin ABC transporter ATP-binding protein K10108.
       0.898
D920_02295
NAD dependent epimerase/dehydratase family protein; KEGG: efu:HMPREF0351_12357 1.5e-72 flavin reductase K07118.
       0.896
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
       0.884
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
       0.878
D920_02702
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.872
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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