Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_03131Hypothetical protein. (39 aa)    
Predicted Functional Partners:
D920_03130
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.773
D920_03132
Hypothetical protein; KEGG: efc:EFAU004_02511 1.0e-151 adenine-specific methyltransferase; Psort location: CytoplasmicMembrane, score: 8.16.
       0.651
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
       0.638
D920_03129
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.608
D920_03126
Competence protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.554
D920_03127
Prepilin-type cleavage/methylation protein; Psort location: CytoplasmicMembrane, score: 9.55; overlaps another CDS with the same product name.
       0.554
D920_03128
Prepilin-type cleavage/methylation protein; Psort location: Cytoplasmic, score: 7.50; overlaps another CDS with the same product name.
       0.554
D920_03125
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.406
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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