Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
D920_03141Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (161 aa)    
Predicted Functional Partners:
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
     
 0.999
D920_03143
RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
     
 0.999
dtd
D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.
     
 0.998
D920_03140
KEGG: efu:HMPREF0351_12443 1.7e-85 alkA; DNA-3-methyladenine glycosylase II K03652; Psort location: Cytoplasmic, score: 7.50; Belongs to the DNA glycosylase MPG family.
       0.997
D920_03144
KEGG: erh:ERH_0988 2.4e-10 deoC; deoxyribose-phosphate aldolase; K01619 deoxyribose-phosphate aldolase; Psort location: Cytoplasmic, score: 7.50.
       0.997
D920_03146
GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
     
 0.997
D920_03139
ATPase, AAA family; KEGG: efu:HMPREF0351_12444 6.9e-201 crossover junction endodeoxyribonuclease K07478; Psort location: Cytoplasmic, score: 7.50.
       0.992
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.937
D920_00871
Pentapeptide repeat family protein; KEGG: dsa:Desal_0704 0.0038 adenylate cyclase K05851.
       0.932
D920_02274
Endonuclease/exonuclease/phosphatase family protein; KEGG: scp:HMPREF0833_11055 1.9e-56 rgfB; RgfB protein K06896; Psort location: Cytoplasmic, score: 7.50.
 
     0.921
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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