STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpBSegregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (176 aa)    
Predicted Functional Partners:
KXI14420.1
ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
 
 
 0.999
smc
Segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.868
cmk
Cytidylate kinase; KEGG: cdf:CD1816 1.3e-66 cmk; cytidylate kinase K00945; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.774
KXI14419.1
Peptidase, M50 family; Psort location: CytoplasmicMembrane, score: 10.00.
       0.744
KXI10795.1
Pseudouridylate synthase; KEGG: cdf:CD2050 2.3e-83 rluB; 23S RNA and tRNA pseudouridine synthase K06178; Psort location: Cytoplasmic, score: 9.97; Belongs to the pseudouridine synthase RsuA family.
 
  
 0.688
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
    0.671
KXI10968.1
Putative 16S pseudouridylate synthase; KEGG: cdf:CD0405 4.9e-81 RNA pseudouridine synthase K06183; Psort location: Cytoplasmic, score: 9.97; Belongs to the pseudouridine synthase RsuA family.
 
  
 0.610
KXI13894.1
KEGG: ppy:PPE_01619 7.2e-206 PTS system fructose-specific EIIBBC component (EIIBBC-Fru); K02768 PTS system, fructose-specific IIA component; K02769 PTS system, fructose-specific IIB component K02770; Psort location: CytoplasmicMembrane, score: 10.00.
   
  
 0.543
rnjA
Ribonuclease J 1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.538
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.513
Your Current Organism:
Peptostreptococcus anaerobius
NCBI taxonomy Id: 1261
Other names: ATCC 27337, CCUG 7835, CIP 104411, DSM 2949, LMG 15865, LMG:15865, NCTC 11460, P. anaerobius, Streptococcus anaerob, Streptococcus anaerobius, VPI 4330
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