Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KXI13029.1 | rho | HMPREF3195_00922 | HMPREF3195_01269 | r3H domain protein; KEGG: sgg:SGGBAA2069_c20720 6.9e-13 jag; Jag family RNA-binding protein K06346; Psort location: Cytoplasmic, score: 7.50. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.536 |
| KXI13029.1 | rnpA | HMPREF3195_00922 | HMPREF3195_00919 | r3H domain protein; KEGG: sgg:SGGBAA2069_c20720 6.9e-13 jag; Jag family RNA-binding protein K06346; Psort location: Cytoplasmic, score: 7.50. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.860 |
| KXI13029.1 | rplB | HMPREF3195_00922 | HMPREF3195_00859 | r3H domain protein; KEGG: sgg:SGGBAA2069_c20720 6.9e-13 jag; Jag family RNA-binding protein K06346; Psort location: Cytoplasmic, score: 7.50. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.528 |
| KXI13029.1 | rpmH | HMPREF3195_00922 | HMPREF3195_00918 | r3H domain protein; KEGG: sgg:SGGBAA2069_c20720 6.9e-13 jag; Jag family RNA-binding protein K06346; Psort location: Cytoplasmic, score: 7.50. | Ribosomal protein L34; KEGG: rri:A1G_05155 1.0e-09 rpmH; 50S ribosomal protein L34 K02914; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL34 family. | 0.631 |
| KXI13029.1 | yidC | HMPREF3195_00922 | HMPREF3195_00921 | r3H domain protein; KEGG: sgg:SGGBAA2069_c20720 6.9e-13 jag; Jag family RNA-binding protein K06346; Psort location: Cytoplasmic, score: 7.50. | Membrane protein insertase, YidC/Oxa1 family; Psort location: CytoplasmicMembrane, score: 10.00. | 0.939 |
| KXI13029.1 | yidD | HMPREF3195_00922 | HMPREF3195_00920 | r3H domain protein; KEGG: sgg:SGGBAA2069_c20720 6.9e-13 jag; Jag family RNA-binding protein K06346; Psort location: Cytoplasmic, score: 7.50. | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.840 |
| KXI13741.1 | rnpA | HMPREF3195_00544 | HMPREF3195_00919 | RNA methyltransferase, RsmD family; KEGG: ctc:CTC01232 7.7e-35 methyltransferase; Psort location: Cytoplasmic, score: 7.50. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.487 |
| KXI13741.1 | yidD | HMPREF3195_00544 | HMPREF3195_00920 | RNA methyltransferase, RsmD family; KEGG: ctc:CTC01232 7.7e-35 methyltransferase; Psort location: Cytoplasmic, score: 7.50. | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.721 |
| metG | rplB | HMPREF3195_00513 | HMPREF3195_00859 | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.659 |
| metG | serS | HMPREF3195_00513 | HMPREF3195_00907 | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.752 |
| metG | yidC | HMPREF3195_00513 | HMPREF3195_00921 | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Membrane protein insertase, YidC/Oxa1 family; Psort location: CytoplasmicMembrane, score: 10.00. | 0.576 |
| metG | yidD | HMPREF3195_00513 | HMPREF3195_00920 | methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.584 |
| rho | KXI13029.1 | HMPREF3195_01269 | HMPREF3195_00922 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | r3H domain protein; KEGG: sgg:SGGBAA2069_c20720 6.9e-13 jag; Jag family RNA-binding protein K06346; Psort location: Cytoplasmic, score: 7.50. | 0.536 |
| rho | rnpA | HMPREF3195_01269 | HMPREF3195_00919 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.718 |
| rho | rplB | HMPREF3195_01269 | HMPREF3195_00859 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.528 |
| rho | secE | HMPREF3195_01269 | HMPREF3195_01147 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.424 |
| rho | yidC | HMPREF3195_01269 | HMPREF3195_00921 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Membrane protein insertase, YidC/Oxa1 family; Psort location: CytoplasmicMembrane, score: 10.00. | 0.758 |
| rho | yidD | HMPREF3195_01269 | HMPREF3195_00920 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.588 |
| rnpA | KXI13029.1 | HMPREF3195_00919 | HMPREF3195_00922 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | r3H domain protein; KEGG: sgg:SGGBAA2069_c20720 6.9e-13 jag; Jag family RNA-binding protein K06346; Psort location: Cytoplasmic, score: 7.50. | 0.860 |
| rnpA | KXI13741.1 | HMPREF3195_00919 | HMPREF3195_00544 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | RNA methyltransferase, RsmD family; KEGG: ctc:CTC01232 7.7e-35 methyltransferase; Psort location: Cytoplasmic, score: 7.50. | 0.487 |
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