metN-2 protein (Peptostreptococcus anaerobius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

metN-2

ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (354 aa)

Predicted Functional Partners:

metP_2

0.998

metP_1

0.993

KXI12062.1

0.993

metQ_1

0.988

KXI14318.1

0.918

KXI10953.1

0.918

KXI11141.1

0.902

KXI12756.1

0.898

KXI10086.1

0.855

yecS

0.731

Your Current Organism:

Peptostreptococcus anaerobius

NCBI taxonomy Id: 1261
Other names: ATCC 27337, CCUG 7835, CIP 104411, DSM 2949, LMG 15865, LMG:15865, NCTC 11460, P. anaerobius, Streptococcus anaerob, Streptococcus anaerobius, VPI 4330

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXI10086.1	KXI10953.1	HMPREF3195_01942	HMPREF3195_01695	ABC transporter, ATP-binding protein; KEGG: ssg:Selsp_1600 2.7e-96 Xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: osp:Odosp_1370 3.4e-96 Xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.	0.443
KXI10086.1	KXI11141.1	HMPREF3195_01942	HMPREF3195_01474	ABC transporter, ATP-binding protein; KEGG: ssg:Selsp_1600 2.7e-96 Xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: cle:Clole_4053 4.2e-114 xenobiotic-transporting ATPase K06148; Psort location: CytoplasmicMembrane, score: 10.00.	0.463
KXI10086.1	metN-2	HMPREF3195_01942	HMPREF3195_01121	ABC transporter, ATP-binding protein; KEGG: ssg:Selsp_1600 2.7e-96 Xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.855
KXI10953.1	KXI10086.1	HMPREF3195_01695	HMPREF3195_01942	ABC transporter, ATP-binding protein; KEGG: osp:Odosp_1370 3.4e-96 Xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: ssg:Selsp_1600 2.7e-96 Xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.	0.443
KXI10953.1	KXI12756.1	HMPREF3195_01695	HMPREF3195_01025	ABC transporter, ATP-binding protein; KEGG: osp:Odosp_1370 3.4e-96 Xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.434
KXI10953.1	metN-2	HMPREF3195_01695	HMPREF3195_01121	ABC transporter, ATP-binding protein; KEGG: osp:Odosp_1370 3.4e-96 Xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.918
KXI11141.1	KXI10086.1	HMPREF3195_01474	HMPREF3195_01942	ABC transporter, ATP-binding protein; KEGG: cle:Clole_4053 4.2e-114 xenobiotic-transporting ATPase K06148; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: ssg:Selsp_1600 2.7e-96 Xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.	0.463
KXI11141.1	KXI12756.1	HMPREF3195_01474	HMPREF3195_01025	ABC transporter, ATP-binding protein; KEGG: cle:Clole_4053 4.2e-114 xenobiotic-transporting ATPase K06148; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.463
KXI11141.1	metN-2	HMPREF3195_01474	HMPREF3195_01121	ABC transporter, ATP-binding protein; KEGG: cle:Clole_4053 4.2e-114 xenobiotic-transporting ATPase K06148; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.902
KXI12062.1	metN-2	HMPREF3195_01123	HMPREF3195_01121	Putative D-methionine-binding lipoprotein MetQ; KEGG: pfe:PSF113_0025 2.9e-44 nlpA; protein NlpA K02073; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the nlpA lipoprotein family.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.993
KXI12062.1	metP_1	HMPREF3195_01123	HMPREF3195_00283	Putative D-methionine-binding lipoprotein MetQ; KEGG: pfe:PSF113_0025 2.9e-44 nlpA; protein NlpA K02073; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the nlpA lipoprotein family.	KEGG: pfe:PSF113_0026 9.4e-46 D-Methionine ABC transporter permease protein K02072; Psort location: CytoplasmicMembrane, score: 10.00.	0.998
KXI12062.1	metP_2	HMPREF3195_01123	HMPREF3195_01122	Putative D-methionine-binding lipoprotein MetQ; KEGG: pfe:PSF113_0025 2.9e-44 nlpA; protein NlpA K02073; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the nlpA lipoprotein family.	KEGG: pfe:PSF113_0026 9.3e-39 D-Methionine ABC transporter permease protein K02072; Psort location: CytoplasmicMembrane, score: 10.00.	0.998
KXI12756.1	KXI10953.1	HMPREF3195_01025	HMPREF3195_01695	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: osp:Odosp_1370 3.4e-96 Xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.	0.434
KXI12756.1	KXI11141.1	HMPREF3195_01025	HMPREF3195_01474	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: cle:Clole_4053 4.2e-114 xenobiotic-transporting ATPase K06148; Psort location: CytoplasmicMembrane, score: 10.00.	0.463
KXI12756.1	metN-2	HMPREF3195_01025	HMPREF3195_01121	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.898
KXI14318.1	metN-2	HMPREF3195_00290	HMPREF3195_01121	Efflux ABC transporter, permease protein; KEGG: efl:EF62_0750 4.0e-54 permease family protein K02004; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.918
metN-2	KXI10086.1	HMPREF3195_01121	HMPREF3195_01942	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	ABC transporter, ATP-binding protein; KEGG: ssg:Selsp_1600 2.7e-96 Xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.	0.855
metN-2	KXI10953.1	HMPREF3195_01121	HMPREF3195_01695	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	ABC transporter, ATP-binding protein; KEGG: osp:Odosp_1370 3.4e-96 Xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.	0.918
metN-2	KXI11141.1	HMPREF3195_01121	HMPREF3195_01474	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	ABC transporter, ATP-binding protein; KEGG: cle:Clole_4053 4.2e-114 xenobiotic-transporting ATPase K06148; Psort location: CytoplasmicMembrane, score: 10.00.	0.902
metN-2	KXI12062.1	HMPREF3195_01121	HMPREF3195_01123	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	Putative D-methionine-binding lipoprotein MetQ; KEGG: pfe:PSF113_0025 2.9e-44 nlpA; protein NlpA K02073; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the nlpA lipoprotein family.	0.993

page 1 of 2

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About