STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXI11628.1Porphobilinogen synthase; KEGG: cdf:CD3419 1.4e-115 hemB; delta-aminolevulinic acid dehydratase K01698; Psort location: Cytoplasmic, score: 7.50; Belongs to the ALAD family. (321 aa)    
Predicted Functional Partners:
KXI10310.1
KEGG: top:TOPB45_1456 2.6e-89 uroporphyrin-III C-methyltransferase K13542; Psort location: Cytoplasmic, score: 7.50.
 0.999
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
 
 0.997
KXI10309.1
Hypothetical protein; KEGG: str:Sterm_2300 8.6e-20 siroheme synthase; K02304 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.975
atpD-2
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
 
    
 0.757
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.622
KXI11269.1
KEGG: eha:Ethha_0637 4.5e-94 riboflavin biosynthesis protein RibD K11752; Psort location: Cytoplasmic, score: 7.50.
     
 0.596
cbiF
KEGG: cdf:CD3426 4.9e-88 cbiF; precorrin-4 C(11)-methyltransferase K05936; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.525
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.503
KXI13238.1
Pyruvate synthase; KEGG: cdc:CD196_2523 0. nifJ; pyruvate-flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.486
KXI14824.1
ABC1 family protein; KEGG: hor:Hore_12230 1.9e-77 2-octaprenylphenol hydroxylase K03688; Psort location: CytoplasmicMembrane, score: 8.78.
    
 0.474
Your Current Organism:
Peptostreptococcus anaerobius
NCBI taxonomy Id: 1261
Other names: ATCC 27337, CCUG 7835, CIP 104411, DSM 2949, LMG 15865, LMG:15865, NCTC 11460, P. anaerobius, Streptococcus anaerob, Streptococcus anaerobius, VPI 4330
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