STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
melRKEGG: lwe:lwe2260 4.6e-14 Ada regulatory protein; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase; Psort location: Cytoplasmic, score: 9.67. (249 aa)    
Predicted Functional Partners:
KXI13238.1
Pyruvate synthase; KEGG: cdc:CD196_2523 0. nifJ; pyruvate-flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 7.50.
     
 0.866
KXI10954.1
Transcriptional regulator, AraC family; KEGG: bay:RBAM_037970 8.1e-10 adaA; AdaA K13530; Psort location: Cytoplasmic, score: 9.67.
  
     0.746
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.692
KXI11139.1
Hypothetical protein; KEGG: mpg:Theba_0949 3.1e-08 flavodoxin; K00230 menaquinone-dependent protoporphyrinogen oxidase; Psort location: Cytoplasmic, score: 7.50.
  
   0.510
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
   0.466
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.442
KXI14238.1
DNA-binding helix-turn-helix protein; KEGG: apb:SAR116_1185 2.0e-06 transcriptional regulator.
 
 
 0.435
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.432
KXI11885.1
TipAS antibiotic-recognition domain protein; KEGG: llo:LLO_0515 1.5e-11 GTP cyclohydrolase; K06879 7-cyano-7-deazaguanine reductase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.427
KXI13894.1
KEGG: ppy:PPE_01619 7.2e-206 PTS system fructose-specific EIIBBC component (EIIBBC-Fru); K02768 PTS system, fructose-specific IIA component; K02769 PTS system, fructose-specific IIB component K02770; Psort location: CytoplasmicMembrane, score: 10.00.
    
 
 0.421
Your Current Organism:
Peptostreptococcus anaerobius
NCBI taxonomy Id: 1261
Other names: ATCC 27337, CCUG 7835, CIP 104411, DSM 2949, LMG 15865, LMG:15865, NCTC 11460, P. anaerobius, Streptococcus anaerob, Streptococcus anaerobius, VPI 4330
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