Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KXI10976.1 | KXI10977.1 | HMPREF3195_01526 | HMPREF3195_01527 | Addiction module toxin, RelE/StbE family; Psort location: Cytoplasmic, score: 7.50. | Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | 0.957 |
KXI10977.1 | KXI10976.1 | HMPREF3195_01527 | HMPREF3195_01526 | Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | Addiction module toxin, RelE/StbE family; Psort location: Cytoplasmic, score: 7.50. | 0.957 |
KXI10977.1 | KXI13825.1 | HMPREF3195_01527 | HMPREF3195_00500 | Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | Hypothetical protein; KEGG: cfu:CFU_0510 0.0047 multidrug ABC transporter ATPase K09687; Psort location: Cytoplasmic, score: 7.50. | 0.494 |
KXI13825.1 | KXI10977.1 | HMPREF3195_00500 | HMPREF3195_01527 | Hypothetical protein; KEGG: cfu:CFU_0510 0.0047 multidrug ABC transporter ATPase K09687; Psort location: Cytoplasmic, score: 7.50. | Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. | 0.494 |