STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXI10820.1KEGG: cdf:CD1456 8.6e-52 hypothetical protein; K06967 tRNA (adenine22-N1)-methyltransferase; Psort location: Cytoplasmic, score: 7.50. (257 aa)    
Predicted Functional Partners:
KXI10821.1
Dinuclear metal center protein, YbgI family; KEGG: hip:CGSHiEE_02770 2.0e-12 seryl-tRNA synthetase.
 
  
 0.991
KXI14413.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0297 family.
  
     0.754
KXI11621.1
Helix-turn-helix protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.704
KXI14725.1
Putative stage V sporulation protein B; KEGG: ssr:SALIVB_0347 1.3e-30 cystathionine gamma-synthase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.635
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.631
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.619
addA
ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.
 
     0.608
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.602
KXI13765.1
KEGG: edi:EDI_076200 1.8e-05 GRIP1-associated protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.582
mrnC
RNase3 domain protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
  
     0.565
Your Current Organism:
Peptostreptococcus anaerobius
NCBI taxonomy Id: 1261
Other names: ATCC 27337, CCUG 7835, CIP 104411, DSM 2949, LMG 15865, LMG:15865, NCTC 11460, P. anaerobius, Streptococcus anaerob, Streptococcus anaerobius, VPI 4330
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.