STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXI10888.1Hypothetical protein; KEGG: pfa:PFI0685w 0.00026 pseudouridylate synthase, putative; K01718 pseudouridylate synthase. (459 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.919
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.908
KXI14430.1
Threonine/alanine tRNA ligase second additional domain protein; KEGG: bmq:BMQ_2264 1.5e-38 Threonyl and Alanyl tRNA synthetase domain-containing protein K07050; Psort location: Cytoplasmic, score: 9.97.
   
 0.908
KXI11925.1
Hypothetical protein.
  
 0.904
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.904
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.897
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
  0.892
KXI14844.1
Glycosyltransferase, group 2 family protein; KEGG: cfu:CFU_2729 1.1e-19 glycosyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.869
KXI12467.1
Pyruvate kinase; KEGG: cdl:CDR20291_3216 3.2e-210 pykF; pyruvate kinase; K00873 pyruvate kinase; Psort location: Cytoplasmic, score: 7.50.
   
 0.820
yycF_2
Putative transcriptional regulatory protein WalR; KEGG: npu:Npun_F5788 3.7e-44 two component transcriptional regulator K11329; Psort location: Cytoplasmic, score: 9.97.
  
 
  0.817
Your Current Organism:
Peptostreptococcus anaerobius
NCBI taxonomy Id: 1261
Other names: ATCC 27337, CCUG 7835, CIP 104411, DSM 2949, LMG 15865, LMG:15865, NCTC 11460, P. anaerobius, Streptococcus anaerob, Streptococcus anaerobius, VPI 4330
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