STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ08756.1Transcriptional regulator, IclR family. (252 aa)    
Predicted Functional Partners:
SFQ08705.1
Inhibitor of KinA.
  
    0.793
SFQ08732.1
Antagonist of KipI.
  
    0.766
SFQ08779.1
Permease of the drug/metabolite transporter (DMT) superfamily.
 
     0.747
hutH
Histidine ammonia-lyase.
    
 0.721
SFQ16164.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.716
hutI
Imidazolonepropionase.
    
 0.704
SFQ22506.1
3-hydroxyisobutyrate dehydrogenase.
 
  
  0.698
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.681
SFQ39497.1
Malate synthase; Belongs to the malate synthase family.
    
 0.676
SFQ58131.1
Glyoxalase family protein.
  
 
 0.672
Your Current Organism:
Psychrobacillus psychrotolerans
NCBI taxonomy Id: 126156
Other names: Bacillus psychrotolerans, Bacillus psychrotolerans Abd El-Rahman et al. 2002, CIP 107792, DSM 11706, NCIMB 13838, P. psychrotolerans, Psychrobacillus psychrotolerans (Abd El-Rahman et al. 2002) Krishnamurthi et al. 2011, strain 3H1
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