STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM22815.1Diguanylate cyclase (GGDEF) domain-containing protein. (305 aa)    
Predicted Functional Partners:
SFM28848.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
     0.976
SFM88482.1
HDIG domain-containing protein.
 
     0.872
SFM73931.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
     0.796
SFM68579.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
     0.786
SFM23606.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
     0.774
SFN29672.1
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).
  
     0.715
SFM96586.1
HDIG domain-containing protein.
 
     0.713
SFM51483.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
    
0.646
SFM20741.1
Chemotaxis protein methyltransferase CheR.
 
      0.418
Your Current Organism:
Psychrobacillus psychrodurans
NCBI taxonomy Id: 126157
Other names: ATCC BAA-796, Bacillus psychrodurans, Bacillus psychrodurans Abd El-Rahman et al. 2002, CIP 107791, DSM 11713, NCIMB 13837, P. psychrodurans, Psychrobacillus psychrodurans (Abd El-Rahman et al. 2002) Krishnamurthi et al. 2011, strain 68E3
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