STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM24539.1BlaR1 peptidase M56. (282 aa)    
Predicted Functional Partners:
SFM24517.1
Predicted transcriptional regulator.
 
 
 0.985
SFN23515.1
TniQ protein.
  
     0.693
SFN23565.1
Mu transposase, C-terminal.
  
     0.661
SFN23551.1
AAA domain-containing protein.
  
     0.650
SFN23593.1
TnsA endonuclease C terminal.
  
     0.647
SFN23535.1
TniQ protein.
  
     0.629
SFM24561.1
Thioredoxin.
       0.622
bdbC
Disulfide bond formation protein DsbB; Required for disulfide bond formation in some proteins. Belongs to the DsbB family. BdbC subfamily.
       0.611
SFM24613.1
Peroxiredoxin.
       0.528
SFM24500.1
Hypothetical protein.
       0.487
Your Current Organism:
Psychrobacillus psychrodurans
NCBI taxonomy Id: 126157
Other names: ATCC BAA-796, Bacillus psychrodurans, Bacillus psychrodurans Abd El-Rahman et al. 2002, CIP 107791, DSM 11713, NCIMB 13837, P. psychrodurans, Psychrobacillus psychrodurans (Abd El-Rahman et al. 2002) Krishnamurthi et al. 2011, strain 68E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.