STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM19888.1Predicted dehydrogenase. (330 aa)    
Predicted Functional Partners:
SFM19908.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.855
SFM96605.1
Sugar phosphate isomerase/epimerase.
 
 
 0.832
SFM19847.1
Predicted oxidoreductase.
 
 
  0.791
SFM61052.1
Protein FrlC.
  
 
 0.777
SFM37589.1
Fructokinase.
 
 
 0.741
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.724
SFM27906.1
2-dehydro-3-deoxygluconokinase.
 
 
 0.716
SFM61004.1
Fructoselysine 6-kinase.
 
 
 0.681
SFN19894.1
UDP-GlcNAc3NAcA epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
 
 0.648
lysS
lysyl-tRNA synthetase, class 2; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.597
Your Current Organism:
Psychrobacillus psychrodurans
NCBI taxonomy Id: 126157
Other names: ATCC BAA-796, Bacillus psychrodurans, Bacillus psychrodurans Abd El-Rahman et al. 2002, CIP 107791, DSM 11713, NCIMB 13837, P. psychrodurans, Psychrobacillus psychrodurans (Abd El-Rahman et al. 2002) Krishnamurthi et al. 2011, strain 68E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.