STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM36337.1Spore coat protein Z. (171 aa)    
Predicted Functional Partners:
SFM59085.1
Spore coat protein X.
  
  
 0.755
SFM59100.1
Spore coat protein X.
  
  
 0.755
SFM36478.1
Stage VI sporulation protein F.
  
    0.653
SFM36406.1
Stage V sporulation protein AD.
  
    0.551
SFM36382.1
Stage V sporulation protein AC.
  
    0.549
SFM36359.1
Hypothetical protein.
       0.546
SFM36425.1
Stage V sporulation protein AE.
       0.540
SFM42276.1
Dipicolinate synthase subunit A.
   
    0.463
SFM36451.1
Conserved hypothetical tiny transmembrane protein.
  
    0.462
SFM59118.1
Hypothetical protein.
   
  
 0.460
Your Current Organism:
Psychrobacillus psychrodurans
NCBI taxonomy Id: 126157
Other names: ATCC BAA-796, Bacillus psychrodurans, Bacillus psychrodurans Abd El-Rahman et al. 2002, CIP 107791, DSM 11713, NCIMB 13837, P. psychrodurans, Psychrobacillus psychrodurans (Abd El-Rahman et al. 2002) Krishnamurthi et al. 2011, strain 68E3
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