Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFM50803.1 | SFM50850.1 | SAMN05421832_103147 | SAMN05421832_103149 | Uncharacterized protein YpmB. | DNA replication protein. | 0.734 |
SFM50803.1 | SFM50894.1 | SAMN05421832_103147 | SAMN05421832_103151 | Uncharacterized protein YpmB. | Hypothetical protein. | 0.578 |
SFM50803.1 | asnS | SAMN05421832_103147 | SAMN05421832_103148 | Uncharacterized protein YpmB. | asparaginyl-tRNA synthetase. | 0.740 |
SFM50803.1 | nth | SAMN05421832_103147 | SAMN05421832_103150 | Uncharacterized protein YpmB. | Endonuclease-3; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.629 |
SFM50850.1 | SFM50803.1 | SAMN05421832_103149 | SAMN05421832_103147 | DNA replication protein. | Uncharacterized protein YpmB. | 0.734 |
SFM50850.1 | SFM50894.1 | SAMN05421832_103149 | SAMN05421832_103151 | DNA replication protein. | Hypothetical protein. | 0.765 |
SFM50850.1 | SFM84006.1 | SAMN05421832_103149 | SAMN05421832_107213 | DNA replication protein. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.848 |
SFM50850.1 | SFN00949.1 | SAMN05421832_103149 | SAMN05421832_11169 | DNA replication protein. | Primosomal protein DnaI. | 0.968 |
SFM50850.1 | SFN00962.1 | SAMN05421832_103149 | SAMN05421832_11170 | DNA replication protein. | Replicative DNA helicase loader DnaB. | 0.926 |
SFM50850.1 | SFN13675.1 | SAMN05421832_103149 | SAMN05421832_11629 | DNA replication protein. | DNA replication protein DnaC. | 0.818 |
SFM50850.1 | asnS | SAMN05421832_103149 | SAMN05421832_103148 | DNA replication protein. | asparaginyl-tRNA synthetase. | 0.725 |
SFM50850.1 | dnaG | SAMN05421832_103149 | SAMN05421832_11224 | DNA replication protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.866 |
SFM50850.1 | nth | SAMN05421832_103149 | SAMN05421832_103150 | DNA replication protein. | Endonuclease-3; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.939 |
SFM50850.1 | priA | SAMN05421832_103149 | SAMN05421832_102325 | DNA replication protein. | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.712 |
SFM50894.1 | SFM50803.1 | SAMN05421832_103151 | SAMN05421832_103147 | Hypothetical protein. | Uncharacterized protein YpmB. | 0.578 |
SFM50894.1 | SFM50850.1 | SAMN05421832_103151 | SAMN05421832_103149 | Hypothetical protein. | DNA replication protein. | 0.765 |
SFM50894.1 | asnS | SAMN05421832_103151 | SAMN05421832_103148 | Hypothetical protein. | asparaginyl-tRNA synthetase. | 0.630 |
SFM50894.1 | nth | SAMN05421832_103151 | SAMN05421832_103150 | Hypothetical protein. | Endonuclease-3; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.777 |
SFM84006.1 | SFM50850.1 | SAMN05421832_107213 | SAMN05421832_103149 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | DNA replication protein. | 0.848 |
SFM84006.1 | SFN00949.1 | SAMN05421832_107213 | SAMN05421832_11169 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Primosomal protein DnaI. | 0.988 |
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