Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFM43092.1 | SFM66519.1 | SAMN05421832_102469 | SAMN05421832_10558 | Protein of unknown function. | Hypothetical protein. | 0.849 |
SFM66519.1 | SFM43092.1 | SAMN05421832_10558 | SAMN05421832_102469 | Hypothetical protein. | Protein of unknown function. | 0.849 |
SFM66519.1 | SFM89190.1 | SAMN05421832_10558 | SAMN05421832_108157 | Hypothetical protein. | beta-N-acetylhexosaminidase. | 0.658 |
SFM66519.1 | SFN17943.1 | SAMN05421832_10558 | SAMN05421832_11853 | Hypothetical protein. | Preprotein translocase subunit YajC. | 0.672 |
SFM66519.1 | addA | SAMN05421832_10558 | SAMN05421832_10295 | Hypothetical protein. | DNA helicase/exodeoxyribonuclease V, subunit A; ATP-dependent DNA helicase. | 0.686 |
SFM66519.1 | cheB | SAMN05421832_10558 | SAMN05421832_102396 | Hypothetical protein. | Two-component system, chemotaxis family, response regulator CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.669 |
SFM66519.1 | ffh | SAMN05421832_10558 | SAMN05421832_102350 | Hypothetical protein. | Signal recognition particle subunit SRP54; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.684 |
SFM66519.1 | glgB | SAMN05421832_10558 | SAMN05421832_102483 | Hypothetical protein. | 1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. | 0.661 |
SFM66519.1 | guaA | SAMN05421832_10558 | SAMN05421832_12512 | Hypothetical protein. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.726 |
SFM66519.1 | secE | SAMN05421832_10558 | SAMN05421832_10763 | Hypothetical protein. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.678 |
SFM66519.1 | secY | SAMN05421832_10558 | SAMN05421832_10722 | Hypothetical protein. | Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.694 |
SFM89190.1 | SFM66519.1 | SAMN05421832_108157 | SAMN05421832_10558 | beta-N-acetylhexosaminidase. | Hypothetical protein. | 0.658 |
SFN17943.1 | SFM66519.1 | SAMN05421832_11853 | SAMN05421832_10558 | Preprotein translocase subunit YajC. | Hypothetical protein. | 0.672 |
SFN17943.1 | ffh | SAMN05421832_11853 | SAMN05421832_102350 | Preprotein translocase subunit YajC. | Signal recognition particle subunit SRP54; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.733 |
SFN17943.1 | guaA | SAMN05421832_11853 | SAMN05421832_12512 | Preprotein translocase subunit YajC. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.518 |
SFN17943.1 | secE | SAMN05421832_11853 | SAMN05421832_10763 | Preprotein translocase subunit YajC. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.857 |
SFN17943.1 | secY | SAMN05421832_11853 | SAMN05421832_10722 | Preprotein translocase subunit YajC. | Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.891 |
addA | SFM66519.1 | SAMN05421832_10295 | SAMN05421832_10558 | DNA helicase/exodeoxyribonuclease V, subunit A; ATP-dependent DNA helicase. | Hypothetical protein. | 0.686 |
cheB | SFM66519.1 | SAMN05421832_102396 | SAMN05421832_10558 | Two-component system, chemotaxis family, response regulator CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | Hypothetical protein. | 0.669 |
ffh | SFM66519.1 | SAMN05421832_102350 | SAMN05421832_10558 | Signal recognition particle subunit SRP54; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Hypothetical protein. | 0.684 |
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