STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM73460.1GntR family transcriptional regulator. (257 aa)    
Predicted Functional Partners:
SFM73281.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG.
 
  
 0.817
SFM73257.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH.
 
  
 0.803
SFM73232.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI.
 
  
 0.779
SFM73159.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase.
 
  
 0.778
SFM60979.1
GntR family transcriptional regulator, frlABCD operon transcriptional regulator.
  
     0.771
SFM73204.1
alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase.
 
  
 0.770
SFM73133.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL.
 
  
 0.763
SFM73175.1
Putative phosphonate transport system ATP-binding protein.
 
  
 0.746
SFM73483.1
Superfamily II DNA or RNA helicase, SNF2 family.
       0.675
SFM42711.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.624
Your Current Organism:
Psychrobacillus psychrodurans
NCBI taxonomy Id: 126157
Other names: ATCC BAA-796, Bacillus psychrodurans, Bacillus psychrodurans Abd El-Rahman et al. 2002, CIP 107791, DSM 11713, NCIMB 13837, P. psychrodurans, Psychrobacillus psychrodurans (Abd El-Rahman et al. 2002) Krishnamurthi et al. 2011, strain 68E3
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