STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM83662.1RNA polymerase sigma-70 factor, ECF subfamily. (174 aa)    
Predicted Functional Partners:
SFM58522.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.774
SFM77333.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.774
SFM83677.1
Hypothetical protein.
       0.773
SFM24310.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.772
SFM55392.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.772
SFM55851.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.771
SFM98106.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.771
SFN06282.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.766
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.752
SFM24170.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.747
Your Current Organism:
Psychrobacillus psychrodurans
NCBI taxonomy Id: 126157
Other names: ATCC BAA-796, Bacillus psychrodurans, Bacillus psychrodurans Abd El-Rahman et al. 2002, CIP 107791, DSM 11713, NCIMB 13837, P. psychrodurans, Psychrobacillus psychrodurans (Abd El-Rahman et al. 2002) Krishnamurthi et al. 2011, strain 68E3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.