Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFN03344.1 | SFN03363.1 | SAMN05421832_11231 | SAMN05421832_11232 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Undecaprenol kinase. | 0.794 |
SFN03344.1 | SFN03390.1 | SAMN05421832_11231 | SAMN05421832_11234 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Hypothetical protein. | 0.743 |
SFN03344.1 | SFN03404.1 | SAMN05421832_11231 | SAMN05421832_11235 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Phosphate starvation-inducible protein PhoH. | 0.686 |
SFN03344.1 | SFN03415.1 | SAMN05421832_11231 | SAMN05421832_11236 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Similar to stage IV sporulation protein. | 0.453 |
SFN03344.1 | era | SAMN05421832_11231 | SAMN05421832_11230 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.949 |
SFN03344.1 | recO | SAMN05421832_11231 | SAMN05421832_11229 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.813 |
SFN03344.1 | ybeY | SAMN05421832_11231 | SAMN05421832_11233 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.983 |
SFN03363.1 | SFN03344.1 | SAMN05421832_11232 | SAMN05421832_11231 | Undecaprenol kinase. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.794 |
SFN03363.1 | SFN03390.1 | SAMN05421832_11232 | SAMN05421832_11234 | Undecaprenol kinase. | Hypothetical protein. | 0.774 |
SFN03363.1 | SFN03404.1 | SAMN05421832_11232 | SAMN05421832_11235 | Undecaprenol kinase. | Phosphate starvation-inducible protein PhoH. | 0.552 |
SFN03363.1 | SFN03415.1 | SAMN05421832_11232 | SAMN05421832_11236 | Undecaprenol kinase. | Similar to stage IV sporulation protein. | 0.457 |
SFN03363.1 | era | SAMN05421832_11232 | SAMN05421832_11230 | Undecaprenol kinase. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.870 |
SFN03363.1 | recO | SAMN05421832_11232 | SAMN05421832_11229 | Undecaprenol kinase. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.832 |
SFN03363.1 | ybeY | SAMN05421832_11232 | SAMN05421832_11233 | Undecaprenol kinase. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.961 |
SFN03390.1 | SFN03344.1 | SAMN05421832_11234 | SAMN05421832_11231 | Hypothetical protein. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.743 |
SFN03390.1 | SFN03363.1 | SAMN05421832_11234 | SAMN05421832_11232 | Hypothetical protein. | Undecaprenol kinase. | 0.774 |
SFN03390.1 | SFN03404.1 | SAMN05421832_11234 | SAMN05421832_11235 | Hypothetical protein. | Phosphate starvation-inducible protein PhoH. | 0.489 |
SFN03390.1 | SFN03415.1 | SAMN05421832_11234 | SAMN05421832_11236 | Hypothetical protein. | Similar to stage IV sporulation protein. | 0.478 |
SFN03390.1 | era | SAMN05421832_11234 | SAMN05421832_11230 | Hypothetical protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.743 |
SFN03390.1 | recO | SAMN05421832_11234 | SAMN05421832_11229 | Hypothetical protein. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.706 |
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