STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN17484.1Type IV pilus assembly protein PilM. (322 aa)    
Predicted Functional Partners:
SFN17499.1
Hypothetical protein.
  
 0.997
SFN17514.1
Hypothetical protein.
  
 
 0.969
SFN17456.1
Type IV pilus assembly protein PilC.
 
 
 
 0.911
SFN17433.1
Type IV pilus assembly protein PilB.
 
 
 
 0.893
SFN17469.1
Type IV pilus assembly protein PilA.
 
     0.891
SFN17527.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
 
  
 0.849
SFN17421.1
VanW like protein.
 
     0.846
SFN17447.1
Twitching motility protein PilT.
 
   
 0.736
SFN20941.1
Competence protein ComGA.
   
 
 0.709
SFN20962.1
Competence protein ComGB.
   
 
 0.709
Your Current Organism:
Psychrobacillus psychrodurans
NCBI taxonomy Id: 126157
Other names: ATCC BAA-796, Bacillus psychrodurans, Bacillus psychrodurans Abd El-Rahman et al. 2002, CIP 107791, DSM 11713, NCIMB 13837, P. psychrodurans, Psychrobacillus psychrodurans (Abd El-Rahman et al. 2002) Krishnamurthi et al. 2011, strain 68E3
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.