STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN19417.1VTC domain-containing protein. (233 aa)    
Predicted Functional Partners:
SFN19405.1
Uncharacterized membrane protein YhiD, involved in acid resistance.
 
    0.940
groL
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
  
  0.898
SFM36088.1
Protein of unknown function.
 
    0.885
SFM55291.1
Tetratrico peptide repeat-containing protein.
  
  
  0.836
SFN19386.1
Protein of unknown function.
 
     0.783
SFM62939.1
Hypothetical protein.
    
 0.597
SFM77162.1
Zn-dependent protease with chaperone function.
    
 0.597
SFN22030.1
Ankyrin repeat-containing protein.
    
 0.597
SFM36000.1
Hypothetical protein.
 
     0.580
SFM36042.1
Uncharacterized membrane protein.
 
     0.566
Your Current Organism:
Psychrobacillus psychrodurans
NCBI taxonomy Id: 126157
Other names: ATCC BAA-796, Bacillus psychrodurans, Bacillus psychrodurans Abd El-Rahman et al. 2002, CIP 107791, DSM 11713, NCIMB 13837, P. psychrodurans, Psychrobacillus psychrodurans (Abd El-Rahman et al. 2002) Krishnamurthi et al. 2011, strain 68E3
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