STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nirDNitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)    
Predicted Functional Partners:
nirB
Nitrite reductase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 
0.958
OEY93976.1
Bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.879
OEY97059.1
Rubredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.829
OEY96879.1
Nitrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.826
OEY97584.1
Rieske; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.816
OEY96878.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.804
OEY93878.1
Nitric oxide dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the globin family.
  
 
 0.684
OEY96877.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.653
OEY96874.1
Formate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.592
cysG
uroporphyrinogen-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
  
 0.563
Your Current Organism:
Acinetobacter qingfengensis
NCBI taxonomy Id: 1262585
Other names: A. qingfengensis, Acinetobacter qingfengensis Li et al. 2014, Acinetobacter sp. 2BJ-1, Acinetobacter sp. 2C-3-1, Acinetobacter sp. HF5-2, CFCC 10890, KCTC 32225, strain 2BJ1
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