STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysScysteine--tRNA ligase; Product inferred by homology to UniProt; Belongs to the class-I aminoacyl-tRNA synthetase family. (481 aa)    
Predicted Functional Partners:
CDE93429.1
Serine acetyltransferase; Product inferred by homology to UniProt.
 
 
 0.985
mrnC
Mini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
  
  
 0.961
CDE93430.1
Cysteine synthase; Product inferred by homology to UniProt; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 0.920
CDE93504.1
Homocysteine S-methyltransferase; Product inferred by homology to UniProt.
    
  0.834
gltX
glutamate--tRNA ligase 2; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
 
  
 0.833
serS
serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
 
 
 0.752
ispDF
2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).
       0.728
CDE94467.1
rNA methyltransferase TrmH family group 3; Product inferred by homology to UniProt; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
 
 0.689
CDE94690.1
pilT protein domain protein; Product inferred by homology to UniProt.
       0.654
CDE92791.1
gCN5-related N-acetyltransferase; Product inferred by homology to UniProt.
     
 0.651
Your Current Organism:
Acidaminococcus sp. CAG542
NCBI taxonomy Id: 1262687
Other names: A. sp. CAG:542, Acidaminococcus sp. CAG:542
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