STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE07308.1Putative uncharacterized protein; Product inferred by homology to UniProt. (385 aa)    
Predicted Functional Partners:
CDE07860.1
rNA polymerase sigma factor; Product inferred by homology to UniProt.
  
 
 0.999
CDE07875.1
rNA polymerase sigma factor; Product inferred by homology to UniProt.
  
 
 0.999
CDE07876.1
rNA polymerase sigma 70 subunit RpoD subfamily; Product inferred by homology to UniProt; Belongs to the sigma-70 factor family.
  
 
 0.999
rpoA
dNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.999
sigA
rNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.999
rpoB
dNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.999
CDE08971.1
dNA-directed RNA polymerase; Product inferred by homology to UniProt.
   
 
 0.999
CDE08272.1
Pyruvate-flavodoxin oxidoreductase; Product inferred by homology to UniProt.
   
 
 0.925
CDE07664.1
Chaperone protein dnaJ family; Product inferred by homology to UniProt.
  
 
 0.877
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
  
 
 0.877
Your Current Organism:
Bacillus sp. CAG988
NCBI taxonomy Id: 1262708
Other names: B. sp. CAG:988, Bacillus sp. CAG:988
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