STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE27125.1Aminotransferase class I/II; Product inferred by homology to UniProt. (395 aa)    
Predicted Functional Partners:
CDE28692.1
Prephenate dehydratase; Product inferred by homology to UniProt.
    
 0.910
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
 
 0.702
CDE28956.1
4Fe-4S binding domain protein; Product inferred by homology to UniProt.
    
   0.683
CDE28970.1
Branched-chain-amino-acid transaminase; Product inferred by homology to UniProt.
  
 0.683
CDE29039.1
Prephenate dehydrogenase; Product inferred by homology to UniProt.
    
 0.619
CDE27515.1
Homoserine dehydrogenase; Product inferred by homology to UniProt.
   
 0.610
CDE27126.1
ydjC-like protein; Product inferred by homology to UniProt.
       0.601
CDE28045.1
aCT domain protein; Product inferred by homology to UniProt.
   
 
 0.601
CDE27537.1
Aspartokinase; Product inferred by homology to UniProt; Belongs to the aspartokinase family.
   
 
 0.601
CDE27905.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.600
Your Current Organism:
Catenibacterium sp. CAG290
NCBI taxonomy Id: 1262767
Other names: C. sp. CAG:290, Catenibacterium sp. CAG:290
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