STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE27874.1Transcriptional regulator LysR family; Product inferred by homology to UniProt; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
CDE27872.1
Uncharacterized protein; Product inferred by homology to UniProt.
       0.693
CDE27873.1
Uncharacterized protein; Product inferred by homology to UniProt.
       0.693
CDE27875.1
Uncharacterized protein; Product inferred by homology to UniProt.
       0.507
crcB
Protein CrcB homolog; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.499
CDE28014.1
aBC transporter ATP-binding protein; Product inferred by homology to UniProt.
  
 
 0.423
potA
Polyamine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
 0.423
Your Current Organism:
Catenibacterium sp. CAG290
NCBI taxonomy Id: 1262767
Other names: C. sp. CAG:290, Catenibacterium sp. CAG:290
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