STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE27384.1F5/8 type C domain protein; Product inferred by homology to UniProt. (240 aa)    
Predicted Functional Partners:
CDE28034.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
 0.929
CDE27385.1
F5/8 type C domain protein; Product inferred by homology to UniProt.
 
 
 0.818
secY
Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.712
CDE27068.1
ftsK/SpoIIIE family protein; Product inferred by homology to UniProt.
  
 
 0.676
CDE27646.1
Peptidase S41 family; Product inferred by homology to UniProt; Belongs to the peptidase S41A family.
  
 
 0.650
CDE27394.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
 
 0.574
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.526
CDE27140.1
Hyalurononglucosaminidase; Product inferred by homology to UniProt.
   
 0.510
CDE27970.1
Uncharacterized protein; Product inferred by homology to UniProt.
  
 
 0.429
CDE28738.1
Bacterial group 2 Ig-like protein; Product inferred by homology to UniProt.
  
 
 0.429
Your Current Organism:
Catenibacterium sp. CAG290
NCBI taxonomy Id: 1262767
Other names: C. sp. CAG:290, Catenibacterium sp. CAG:290
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.