STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE27421.1pAP2 family protein; Product inferred by homology to UniProt. (157 aa)    
Predicted Functional Partners:
CDE27518.1
Uncharacterized protein; Product inferred by homology to UniProt.
    
 
 0.873
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.818
CDE27522.1
Putative ATP synthase subunit F; Product inferred by homology to UniProt.
    
 
 0.788
CDE27519.1
Uncharacterized protein; Product inferred by homology to UniProt; Belongs to the V-ATPase 116 kDa subunit family.
    
 
 0.696
CDE27520.1
V-type ATPase 116kDa subunit family protein; Product inferred by homology to UniProt; Belongs to the V-ATPase 116 kDa subunit family.
    
 
 0.696
CDE28686.1
Acyltransferase; Product inferred by homology to UniProt.
   
 0.674
CDE28126.1
cDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Product inferred by homology to UniProt; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
 0.644
CDE27514.1
Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Product inferred by homology to UniProt; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
 0.644
CDE27724.1
Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.642
CDE28350.1
Hydrolase NUDIX family; Product inferred by homology to UniProt.
  
  
  0.640
Your Current Organism:
Catenibacterium sp. CAG290
NCBI taxonomy Id: 1262767
Other names: C. sp. CAG:290, Catenibacterium sp. CAG:290
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