STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE27592.1Phospholipase patatin family; Product inferred by homology to UniProt. (281 aa)    
Predicted Functional Partners:
CDE27589.1
Uncharacterized protein; Product inferred by homology to UniProt.
       0.773
CDE27590.1
Uncharacterized protein; Product inferred by homology to UniProt.
       0.773
CDE27591.1
aBC transporter ATP-binding protein; Product inferred by homology to UniProt.
       0.773
CDE27593.1
Peptidase C26; Product inferred by homology to UniProt.
       0.606
CDE27594.1
Uncharacterized protein; Product inferred by homology to UniProt.
       0.598
CDE27595.1
rNA methyltransferase TrmH family; Product inferred by homology to UniProt; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.598
CDE27596.1
Putative acylphosphatase; Product inferred by homology to UniProt.
       0.598
CDE27597.1
Prokaryotic diacylglycerol kinase; Product inferred by homology to UniProt.
       0.598
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.550
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
 
     0.526
Your Current Organism:
Catenibacterium sp. CAG290
NCBI taxonomy Id: 1262767
Other names: C. sp. CAG:290, Catenibacterium sp. CAG:290
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