STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE44779.1relA/SpoT domain protein; Product inferred by homology to UniProt. (267 aa)    
Predicted Functional Partners:
CDE47132.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
  
 
0.834
CDE46063.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
  
 
0.827
CDE42299.1
relA/SpoT domain protein; Product inferred by homology to UniProt.
  
  
 
0.821
CDE45675.1
nUDIX hydrolase; Product inferred by homology to UniProt.
  
  
  0.812
CDE46724.1
Diguanylate cyclase (GGDEF) domain protein; Product inferred by homology to UniProt.
    
  0.806
mnmE
tRNA modification GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
    0.608
CDE44780.1
Fmu (Sun) domain protein; Product inferred by homology to UniProt.
       0.584
CDE44781.1
Pseudouridine synthase; Product inferred by homology to UniProt; Belongs to the pseudouridine synthase RsuA family.
       0.535
CDE44782.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
       0.525
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
   
    0.472
Your Current Organism:
Clostridium sp. CAG411
NCBI taxonomy Id: 1262802
Other names: C. sp. CAG:411, Clostridium sp. CAG:411
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