STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mutS2mutS2 protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (797 aa)    
Predicted Functional Partners:
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
   0.955
rpsP
30S ribosomal protein S16; Product inferred by homology to UniProt; Belongs to the bacterial ribosomal protein bS16 family.
   
   0.945
rpmB
50S ribosomal protein L28; Product inferred by homology to UniProt; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.936
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
  
 
   0.936
mutS
dNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
 
 
0.935
rpmI
50S ribosomal protein L35; Product inferred by homology to UniProt; Belongs to the bacterial ribosomal protein bL35 family.
   
   0.934
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
   0.934
rpmA
Ribosomal protein L27; Product inferred by homology to UniProt; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.933
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
    
 
 0.933
rpsU
30S ribosomal protein S21; Product inferred by homology to UniProt; Belongs to the bacterial ribosomal protein bS21 family.
   
   0.933
Your Current Organism:
Clostridium sp. CAG413
NCBI taxonomy Id: 1262803
Other names: C. sp. CAG:413, Clostridium sp. CAG:413
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