STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDD54547.1Tripartite ATP-independent periplasmic transporter solute receptor DctP family; Product inferred by homology to UniProt. (348 aa)    
Predicted Functional Partners:
CDD54544.1
tRAP-type C4-dicarboxylate transport system small permease component; Product inferred by homology to UniProt.
 
 
  0.976
CDD54546.1
tRAP transporter DctM subunit; Product inferred by homology to UniProt.
 
  0.952
CDD54525.1
tRAP transporter DctM subunit; Product inferred by homology to UniProt.
 
  0.909
CDD57068.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
  0.908
CDD56486.1
tRAP dicarboxylate transporter DctM subunit; Product inferred by homology to UniProt.
 
  0.906
CDD57066.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
  
  0.881
CDD56484.1
C4-dicarboxylate transporter small subunit; Product inferred by homology to UniProt.
 
 
  0.874
CDD55874.1
tRAP transporter DctQ-like membrane protein; Product inferred by homology to UniProt.
 
 
  0.863
CDD54526.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
 
  0.755
CDD56482.1
Bacterial extracellular solute-binding protein family 7; Product inferred by homology to UniProt.
  
  
 
0.738
Your Current Organism:
Clostridium sp. CAG43
NCBI taxonomy Id: 1262805
Other names: C. sp. CAG:43, Clostridium sp. CAG:43
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.