STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE24118.1Putative permease; Product inferred by homology to UniProt. (109 aa)    
Predicted Functional Partners:
CDE24119.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
     0.893
CDE24789.1
Trypsin-like serine protease with C-terminal PDZ domain; Product inferred by homology to UniProt.
   
 
 0.628
CDE25435.1
Trypsin-like serine protease with C-terminal PDZ domain; Product inferred by homology to UniProt.
   
 
 0.628
CDE24117.1
Unknown; No significant homology to UniProt.
       0.545
CDE26229.1
Sulfurtransferase; Product inferred by homology to UniProt.
  
  
 0.543
CDE25136.1
Uncharacterized protein; Product inferred by homology to UniProt.
 
     0.495
CDE25023.1
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.476
CDE24465.1
Stage III sporulation protein AC; Product inferred by homology to UniProt.
  
     0.433
CDE24744.1
Sporulation protein YunB; Product inferred by homology to UniProt.
 
     0.417
Your Current Organism:
Clostridium sp. CAG440
NCBI taxonomy Id: 1262807
Other names: C. sp. CAG:440, Clostridium sp. CAG:440
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