STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE25050.1Putative PSP1-like protein; Product inferred by homology to UniProt. (308 aa)    
Predicted Functional Partners:
CDE25051.1
aAA ATPase; Product inferred by homology to UniProt.
  
   0.860
rny
Ribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.810
CDE25049.1
Ferredoxin; Product inferred by homology to UniProt.
       0.717
CDE25052.1
Signal peptidase I; Product inferred by homology to UniProt; Belongs to the peptidase S26 family.
       0.473
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
    0.417
CDE25053.1
Multi-sensor signal transduction histidine kinase; Product inferred by homology to UniProt.
       0.403
Your Current Organism:
Clostridium sp. CAG440
NCBI taxonomy Id: 1262807
Other names: C. sp. CAG:440, Clostridium sp. CAG:440
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