STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDA30301.1rNA methyltransferase RsmD family; Product inferred by homology to UniProt. (118 aa)    
Predicted Functional Partners:
CDA30300.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
    0.897
CDA30460.1
Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.777
CDA30299.1
dNA segregation ATPase FtsK/SpoIIIE family; Product inferred by homology to UniProt; Belongs to the FtsK/SpoIIIE/SftA family.
       0.595
CDA30297.1
rNA-metabolising metallo-beta-lactamase; Product inferred by homology to UniProt.
       0.571
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
    0.551
CDA30298.1
Unknown; No significant homology to UniProt.
       0.540
radA
dNA repair protein radA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.417
CDA30296.1
Glycosyl hydrolase glucoamylase; Product inferred by homology to UniProt.
       0.417
Your Current Organism:
Clostridium sp. CAG492
NCBI taxonomy Id: 1262813
Other names: C. sp. CAG:492, Clostridium sp. CAG:492
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.