STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDA52975.1Uncharacterized protein; Product inferred by homology to UniProt. (438 aa)    
Predicted Functional Partners:
CDA52976.1
uPF0473 protein HMPREF9022_01793; Product inferred by homology to UniProt.
       0.773
CDA53148.1
Uncharacterized protein; Product inferred by homology to UniProt.
  
     0.665
CDA52751.1
Mobilization protein; Product inferred by homology to UniProt.
 
     0.650
CDA52281.1
Type IV secretory pathway VirD4 components; Product inferred by homology to UniProt.
 
   
 0.648
CDA52227.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
     0.583
CDA52978.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
       0.582
tyrS
tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
       0.579
CDA53024.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
   
 0.570
CDA52287.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
   
 0.567
CDA52794.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
 
     0.553
Your Current Organism:
Clostridium sp. CAG533
NCBI taxonomy Id: 1262818
Other names: C. sp. CAG:533, Clostridium sp. CAG:533
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.