STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmHRibosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (159 aa)    
Predicted Functional Partners:
rsfS
Iojap-related protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
  
 0.857
CCY72846.1
d-alanyl-D-alanine carboxypeptidase; Product inferred by homology to UniProt; Belongs to the peptidase S11 family.
 
  
 0.823
CCY72848.1
Galactose mutarotase and related enzymes; Product inferred by homology to UniProt.
       0.757
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
   
 0.682
nadD
Probable nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
  
 0.525
CCY72845.1
Uncharacterized protein; Product inferred by homology to UniProt.
       0.522
CCY72445.1
Diguanylate cyclase (GGDEF) domain protein; Product inferred by homology to UniProt.
  
    0.518
CCY73242.1
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; Product inferred by homology to UniProt; Belongs to the TtcA family.
     
 0.517
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.517
CCY74385.1
rNA methyltransferase RsmD family; Product inferred by homology to UniProt.
 
   
 0.505
Your Current Organism:
Eubacterium sp. CAG115
NCBI taxonomy Id: 1262878
Other names: E. sp. CAG:115, Eubacterium sp. CAG:115
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