STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCY73860.1aTP-dependent DNA helicase RecG; Product inferred by homology to UniProt. (684 aa)    
Predicted Functional Partners:
CCY73859.1
dAK2 domain fusion protein YloV; Product inferred by homology to UniProt.
  
    0.875
CCY73855.1
Transcriptional regulators; Product inferred by homology to UniProt.
    
 0.833
CCY73155.1
dNA polymerase; Product inferred by homology to UniProt.
 
   
 0.810
CCY73858.1
Uncharacterized protein conserved in bacteria; Product inferred by homology to UniProt.
       0.797
CCY73861.1
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.767
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
  
    0.733
CCY73874.1
Putative uncharacterized protein; Product inferred by homology to UniProt.
  
  
 0.689
CCY73856.1
Aminotransferase class I and II; Product inferred by homology to UniProt.
       0.686
ruvB
Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
  
  
 0.661
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
 
   
 0.656
Your Current Organism:
Eubacterium sp. CAG115
NCBI taxonomy Id: 1262878
Other names: E. sp. CAG:115, Eubacterium sp. CAG:115
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