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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDA23361.1mRNA degradation ribonucleases J1/J2 (Metallo-beta-lactamase superfamily); Product inferred by homology to UniProt. (551 aa)    
Predicted Functional Partners:
rnj
Hypothetical conserved protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
 
 
0.888
rny
Ribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
  
 
 0.744
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
    
 0.737
CDA22935.1
Product inferred by homology to UniProt; Belongs to the RNR ribonuclease family.
  
 
 0.635
CDA23611.1
Product inferred by homology to UniProt.
  
 
 0.635
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
  
 
 0.592
CDA23362.1
rNA polymerase sigma factor; Product inferred by homology to UniProt; Belongs to the sigma-70 factor family.
  
  
 0.576
rplW
50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
  
  
 0.513
CDA23396.1
dNA topoisomerase; Product inferred by homology to UniProt.
 
  
 0.505
CDA23363.1
rNA polymerase sigma factor; Product inferred by homology to UniProt; Belongs to the sigma-70 factor family.
  
  
 0.478
Your Current Organism:
Mycoplasma sp. CAG611
NCBI taxonomy Id: 1262905
Other names: M. sp. CAG:611, Mycoplasma sp. CAG:611
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.